LsmCut v1.0

What are Lsm files and LsmCut?

Lsm files are used by Zeiss microscopes to store acquired data. Lsm files are specialized TIFF files. Each of them may be simple and contains one single 2D image with one color (wavelength), or it can be extremely complicated and contains all images of a multi-color 4D movie.

LsmCut is a software which opens 3D Lsm files [stacks of 2D (X-Y) images] and provides user-friendly ways to do some basic data processing, e.g. X-Z and Y-Z vertical sectioning, creating maximum projection of the stack, channel mixing, and contrast adjustment.

How to use LsmCut?

The interface of LsmCut is straightforward. On the left of the window are the X-Y, X-Z and Y-Z views. There are a vertical line (X) and a horizontal line (Y) on the X-Y view that indicate the position of the Y-Z and X-Z slices. User can use the mouse (or CTRL-arrow keys) to move the lines. Likewise, User can also use the mouse (or PgUp/PgDn) to change the focal plane (Z) shown in the X-Y view. The precise positions in numbers are shown below the Y-Z view.


Tuesday, May 26, 2009

LsmCut v1.0.1 is now available

LsmCut v1.0.1 .EXE file, .ZIP file.


Old version:
LsmCut v1.0.0 .EXE file, .ZIP file.


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